To add an OD via command line, you need to first bind to it using the command below.
$ dsconfigldap -v -a server.example.com
then use dscl to add the custom search path (CSP).
$ dscl /search append / CSPSearchPath /LDAv3/server.example.com
However, i am not too sure how exactly you would select the CSP after using dscl, but i think the below could work.
$ dscl -q localhost -change /Search SearchPolicy dsAttrTypeStandard:CSPSearchPath
Restart Directory Services after the changes are made.
$ sudo killall DirectoryServices