{"id":310,"date":"2010-03-30T11:26:48","date_gmt":"2010-03-30T03:26:48","guid":{"rendered":"http:\/\/himiko.dnsalias.net\/wordpress\/?p=310"},"modified":"2010-03-30T23:23:04","modified_gmt":"2010-03-30T15:23:04","slug":"parallelization-of-d2_cluster","status":"publish","type":"post","link":"https:\/\/himiko.cube.sg\/wp\/2010\/03\/parallelization-of-d2_cluster\/","title":{"rendered":"Parallelization of d2_cluster"},"content":{"rendered":"

Attached is some work i have done in the past for a company for the benchmarking of d2_cluster in MPI mode. I can’t provide the details as the source was revealed to me under NDA. The attached document was the best i could do.<\/p>\n

Abstract: <\/strong>The increasing use of EST data for sequence analysis has lead to the parallization of such computations in order to provide for the capabilities to analyze these information at a greater rate. Coupled with the improvements and affordability of Linux clusters, new methods of parrallizing d2_cluster to aid in the sequence analysis would be beneficial. D2_cluster was parrallized using MPI in a Beowulf cluster. Results obtained in the tests shows promising results with speed up of 42.7 over a uni-processor system using 8 CPUs.<\/p>\n

Cluster Parallel D2Cluster<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

Attached is some work i have done in the past for a company for the benchmarking of d2_cluster in MPI mode. I can’t provide the details as the source was revealed to me under NDA. The attached document was the best i could do. Abstract: The increasing use of EST data for sequence analysis has … Continue reading Parallelization of d2_cluster<\/span> →<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"ngg_post_thumbnail":0,"jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":false,"jetpack_social_options":{"image_generator_settings":{"template":"highway","default_image_id":0,"font":"","enabled":false},"version":2}},"categories":[4,12],"tags":[11],"class_list":["post-310","post","type-post","status-publish","format-standard","hentry","category-apple","category-commercial","tag-hpc"],"jetpack_publicize_connections":[],"jetpack_featured_media_url":"","jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/paCfEy-50","_links":{"self":[{"href":"https:\/\/himiko.cube.sg\/wp\/wp-json\/wp\/v2\/posts\/310","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/himiko.cube.sg\/wp\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/himiko.cube.sg\/wp\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/himiko.cube.sg\/wp\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/himiko.cube.sg\/wp\/wp-json\/wp\/v2\/comments?post=310"}],"version-history":[{"count":7,"href":"https:\/\/himiko.cube.sg\/wp\/wp-json\/wp\/v2\/posts\/310\/revisions"}],"predecessor-version":[{"id":555,"href":"https:\/\/himiko.cube.sg\/wp\/wp-json\/wp\/v2\/posts\/310\/revisions\/555"}],"wp:attachment":[{"href":"https:\/\/himiko.cube.sg\/wp\/wp-json\/wp\/v2\/media?parent=310"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/himiko.cube.sg\/wp\/wp-json\/wp\/v2\/categories?post=310"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/himiko.cube.sg\/wp\/wp-json\/wp\/v2\/tags?post=310"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}